BioImage Archive OME-NGFF samplesalpha

A selection of images converted into OME-Zarr

Images from the BioImage Archive's collections intended to support NGFF tool development and testing
Summary Study title Imaging method / organism Example
S-BSST410

16 images

Tags: Channels, 3D

Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis confocal fluorescence microscopy

Danio rerio (Zebrafish)
S-BSST522

1282 images

Tags: Timeseries

Actomyosin forces and the energetics of red blood cell invasion by the malaria parasite Plasmodium falciparum Brightfield microscopy

Plasmodium falciparum
S-BIAD7

1170 images

Tags:

High-throughput microscopy exposes a pharmacological window in which dual leucine zipper kinase inhibition preserves neuronal network connectivity confocal fluorescence microscopy

mus musculus (mouse)
S-BIAD144

223 images

Tags: Channels

The glucosylceramide synthase inhibitor PDMP causes lyso-somal lipid accumulation and mTOR inactivation confocal fluorescence microscopy

Homo sapiens (human)
S-BIAD217

2342 images

Tags: Large2D

Large-scale electron microscopy database for human type 1 diabetes scanning transmission EM (STEM)

Homo sapiens (human)
S-BIAD229

434 images

Tags: Channels

Arabidopsis guard cell chloroplasts import cytosolic ATP for starch turnover and stomatal opening confocal fluorescence microscopy

Arabidopsis thaliana (thale cress)
S-BIAD425

507 images

Tags: Channels, 3D

Integrating analog and digital modes of gene expression at Arabidopsis FLC confocal fluorescence microscopy

Arabidopsis thaliana
S-BIAD453

64 images

Tags:

The expression of cancer-testis antigens is associated with immune cell infiltration in the microenvironment of non-small cell lung cancer bright-field microscopy

Homo sapiens (human)
S-BIAD464

1423 images

Tags:

Diffusion and bulk flow of amino acids mediate calcium waves in plants fluorescence microscopy

Arabidopsis thaliana (thale cress)
S-BIAD501

8342 images

Tags:

Open TG-GATEs histopathology dataset digital scanner

Rattus norvegicus (brown rat)
S-BIAD515

7 images

Tags:

RNAScope Data - Mapping the developing human immune system across organs confocal fluorescence microscopy

Homo sapiens (human)
S-BIAD531

1142 images

Tags:

Automated staging of zebrafish embryos using machine-learning bright-field microscopy

Danio rerio (zebrafish)
S-BIAD548

4 images

Tags:

Non-invasive, in vivo fluorescence imaging in mice using SiRos1300 and SiRos1550 dye nanoemulsions Fluorescence imaging using shortwave infrared camera

Mus musculus (mouse)
S-BIAD564

258 images

Tags:

In vivo SPIM and confocal imaging of neuronal efferocytosis by microglia Spinning disk confocal microscopy, SPIM

Danio rerio
S-BIAD570

118 images

Tags:

A spatially resolved atlas of the human lung characterizes a gland-associated immune niche confocal fluorescence microscopy

Mus musculus (mouse)
S-BIAD573

41 images

Tags:

Plasma membrane topography governs the 3D dynamic localization of IgM B cell antigen receptor clusters lattice light sheet microscopy

Homo sapiens (human)
S-BIAD582

4384 images

Tags:

A timer gene network is spatially regulated by the terminal system in the Drosophila embryo confocal fluorescence microscopy

Drosophila melanogaster (fruit fly)
S-BIAD593

80 images

Tags:

Bioenergetics of pollen tube growth in Arabidopsis thaliana confocal fluorescence microscopy

Arabidopsis thaliana (thale cress)
S-BIAD599

584 images

Tags:

An image-based data-driven analysis of cellular architecture in a developing tissue array-scan confocal microscopy

Danio rerio (zebrafish)
S-BIAD605

10 images

Tags: Channels, Large2D

Whole slide images and patches of clear cell renal cell carcinoma counterstained with multiple immunofluorescence for Hoechst, CD3, and CD8. fluorescence microscopy

Homo sapiens (human)