BioImage Archive interactive image exploreralpha

A selection of studies from which individual images can be viewed in-browser

This is a collection of datasets from the BioImage Archive from which one or more images have been converted to OME-Zarr. It is intended to demonstrate visualisation of images from the archive's collection, both in-browser and through compatible desktop clients.

Summary	Study title	Release date	Imaging method / organism
S-BSST410 16 images 3D, Channels,	Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis	2020-06-05	confocal fluorescence microscopy Danio rerio (Zebrafish)
S-BSST522 1282 images Timeseries,	Actomyosin forces and the energetics of red blood cell invasion by the malaria parasite Plasmodium falciparum	2020-11-01	Brightfield microscopy Plasmodium falciparum
S-BIAD7 1170 images	High-throughput microscopy exposes a pharmacological window in which dual leucine zipper kinase inhibition preserves neuronal network connectivity	2019-05-16	confocal fluorescence microscopy mus musculus (mouse)
S-BIAD144 223 images Channels,	The glucosylceramide synthase inhibitor PDMP causes lyso-somal lipid accumulation and mTOR inactivation	2021-05-31	confocal fluorescence microscopy Homo sapiens (human)
S-BIAD217 0 images Large2D,	Large-scale electron microscopy database for human type 1 diabetes	2021-10-11	scanning transmission EM (STEM) Homo sapiens (human)
S-BIAD229 0 images Channels,	Arabidopsis guard cell chloroplasts import cytosolic ATP for starch turnover and stomatal opening	2021-12-31	confocal fluorescence microscopy Arabidopsis thaliana (thale cress)
S-BIAD425 507 images 3D, Channels,	Integrating analog and digital modes of gene expression at Arabidopsis FLC	2022-04-22	confocal fluorescence microscopy Arabidopsis thaliana
S-BIAD453 64 images	The expression of cancer-testis antigens is associated with immune cell infiltration in the microenvironment of non-small cell lung cancer	2023-02-07	bright-field microscopy Homo sapiens (human)
S-BIAD464 1423 images	Diffusion and bulk flow of amino acids mediate calcium waves in plants	2022-10-22	fluorescence microscopy Arabidopsis thaliana (thale cress)
S-BIAD501 8342 images	Open TG-GATEs histopathology dataset	2022-09-22	digital scanner Rattus norvegicus (brown rat)
S-BIAD515 7 images	RNAScope Data - Mapping the developing human immune system across organs	2022-08-09	confocal fluorescence microscopy Homo sapiens (human)
S-BIAD531 1142 images Time series, time series,	Automated staging of zebrafish embryos using machine-learning	2022-08-29	bright-field microscopy Danio rerio (zebrafish)
S-BIAD548 4 images	Non-invasive, in vivo fluorescence imaging in mice using SiRos1300 and SiRos1550 dye nanoemulsions	2022-09-12	Fluorescence imaging using shortwave infrared camera Mus musculus (mouse)
S-BIAD564 258 images	In vivo SPIM and confocal imaging of neuronal efferocytosis by microglia	2022-11-18	Spinning disk confocal microscopy, SPIM Danio rerio
S-BIAD570 109 images	A spatially resolved atlas of the human lung characterizes a gland-associated immune niche	2022-10-24	confocal fluorescence microscopy Mus musculus (mouse)
S-BIAD573 41 images	Plasma membrane topography governs the 3D dynamic localization of IgM B cell antigen receptor clusters	2022-12-30	lattice light sheet microscopy Homo sapiens (human)
S-BIAD582 4384 images	A timer gene network is spatially regulated by the terminal system in the Drosophila embryo	2022-11-01	confocal fluorescence microscopy Drosophila melanogaster (fruit fly)
S-BIAD593 80 images	Bioenergetics of pollen tube growth in Arabidopsis thaliana	2022-12-20	confocal fluorescence microscopy Arabidopsis thaliana (thale cress)
S-BIAD599 584 images 3D,	An image-based data-driven analysis of cellular architecture in a developing tissue	2022-12-13	array-scan confocal microscopy Danio rerio (zebrafish)
S-BIAD605 20 images Large2D, Channels,	Whole slide images and patches of clear cell renal cell carcinoma counterstained with multiple immunofluorescence for Hoechst, CD3, and CD8.	2022-12-25	fluorescence microscopy Homo sapiens (human)