S-BIAD634alpha
An annotated fluorescence image dataset for training nuclear segmentation methods
Released: 2023-03-07By: Sabine Taschner-Mandl, Inge M. Ambros, Peter F. Ambros, Klaus Beiske, Allan Hanbury, Wolfgang Doerr, Tamara Weiss, Maria Berneder, Magdalena Ambros, Eva Bozsaky, Florian Kromp, Teresa Zulueta-Coarasa
On this page
In a nutshell
- 388 images
- 388 annotations
- Study size: 472.2MiB
- No of files in study: 468
- Filetype breakdown:
- .jpg: 79 (16.6MiB)
- .png: 115 (1.5MiB)
- .svg: 79 (4.1MiB)
- .tif: 194 (450.0MiB)
- .txt: 1 (3.1KiB)
- License : CC0
This dataset has
- test data
- ground truth annotations
- training data
- instance segmentation
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Study Summary
Ground-truth annotated fluorescence image dataset for training nuclear segmentation methods
Annotation Summary
Ground truth (expert annotated) nuclear segmentations
Organism
Homo sapiens
Imaging type
confocal fluorescence microscopy
Viewable images
Annotations
- Annotation type(s): segmentation masks
- Annotation method(s): human(expert)
| Annotation ID | Filename | Source Image | Download Size | Actions | AN1 | dataset/groundtruth/Ganglioneuroblastoma_0.tif | dataset/rawimages/Ganglioneuroblastoma_0.tif | 2.1MiB | Download | AN2 | dataset/groundtruth/Ganglioneuroblastoma_1.tif | dataset/rawimages/Ganglioneuroblastoma_1.tif | 2.1MiB | Download | AN3 | dataset/groundtruth/Ganglioneuroblastoma_10.tif | dataset/rawimages/Ganglioneuroblastoma_10.tif | 2.7MiB | Download | AN4 | dataset/groundtruth/Ganglioneuroblastoma_2.tif | dataset/rawimages/Ganglioneuroblastoma_2.tif | 2.1MiB | Download | AN5 | dataset/groundtruth/Ganglioneuroblastoma_3.tif | dataset/rawimages/Ganglioneuroblastoma_3.tif | 2.1MiB | Download | AN6 | dataset/groundtruth/Ganglioneuroblastoma_4.tif | dataset/rawimages/Ganglioneuroblastoma_4.tif | 2.1MiB | Download | AN7 | dataset/groundtruth/Ganglioneuroblastoma_6.tif | dataset/rawimages/Ganglioneuroblastoma_6.tif | 2.7MiB | Download | AN8 | dataset/groundtruth/Ganglioneuroblastoma_7.tif | dataset/rawimages/Ganglioneuroblastoma_7.tif | 2.1MiB | Download | AN9 | dataset/groundtruth/Ganglioneuroblastoma_8.tif | dataset/rawimages/Ganglioneuroblastoma_8.tif | 2.1MiB | Download | AN10 | dataset/groundtruth/Ganglioneuroblastoma_9.tif | dataset/rawimages/Ganglioneuroblastoma_9.tif | 462.3KiB | Download | AN11 | dataset/groundtruth/Neuroblastoma_0.tif | dataset/rawimages/Neuroblastoma_0.tif | 2.5MiB | Download | AN12 | dataset/groundtruth/Neuroblastoma_1.tif | dataset/rawimages/Neuroblastoma_1.tif | 2.5MiB | Download | AN13 | dataset/groundtruth/Neuroblastoma_10.tif | dataset/rawimages/Neuroblastoma_10.tif | 2.5MiB | Download | AN14 | dataset/groundtruth/Neuroblastoma_11.tif | dataset/rawimages/Neuroblastoma_11.tif | 2.5MiB | Download | AN15 | dataset/groundtruth/Neuroblastoma_12.tif | dataset/rawimages/Neuroblastoma_12.tif | 2.5MiB | Download | AN16 | dataset/groundtruth/Neuroblastoma_13.tif | dataset/rawimages/Neuroblastoma_13.tif | 2.5MiB | Download | AN17 | dataset/groundtruth/Neuroblastoma_14.tif | dataset/rawimages/Neuroblastoma_14.tif | 2.5MiB | Download | AN18 | dataset/groundtruth/Neuroblastoma_15.tif | dataset/rawimages/Neuroblastoma_15.tif | 2.5MiB | Download | AN19 | dataset/groundtruth/Neuroblastoma_16.tif | dataset/rawimages/Neuroblastoma_16.tif | 2.5MiB | Download | AN20 | dataset/groundtruth/Neuroblastoma_17.tif | dataset/rawimages/Neuroblastoma_17.tif | 2.5MiB | Download | AN21 | dataset/groundtruth/Neuroblastoma_2.tif | dataset/rawimages/Neuroblastoma_2.tif | 2.5MiB | Download | AN22 | dataset/groundtruth/Neuroblastoma_3.tif | dataset/rawimages/Neuroblastoma_3.tif | 2.5MiB | Download | AN23 | dataset/groundtruth/Neuroblastoma_4.tif | dataset/rawimages/Neuroblastoma_4.tif | 2.5MiB | Download | AN24 | dataset/groundtruth/Neuroblastoma_5.tif | dataset/rawimages/Neuroblastoma_5.tif | 2.5MiB | Download | AN25 | dataset/groundtruth/Neuroblastoma_6.tif | dataset/rawimages/Neuroblastoma_6.tif | 2.5MiB | Download | AN26 | dataset/groundtruth/Neuroblastoma_7.tif | dataset/rawimages/Neuroblastoma_7.tif | 2.5MiB | Download | AN27 | dataset/groundtruth/Neuroblastoma_8.tif | dataset/rawimages/Neuroblastoma_8.tif | 2.5MiB | Download | AN28 | dataset/groundtruth/Neuroblastoma_9.tif | dataset/rawimages/Neuroblastoma_9.tif | 2.5MiB | Download | AN29 | dataset/groundtruth/normal_0.tif | dataset/rawimages/normal_0.tif | 2.5MiB | Download | AN30 | dataset/groundtruth/normal_1.tif | dataset/rawimages/normal_1.tif | 2.5MiB | Download | AN31 | dataset/groundtruth/normal_10.tif | dataset/rawimages/normal_10.tif | 2.5MiB | Download | AN32 | dataset/groundtruth/normal_11.tif | dataset/rawimages/normal_11.tif | 2.5MiB | Download | AN33 | dataset/groundtruth/normal_12.tif | dataset/rawimages/normal_12.tif | 2.5MiB | Download | AN34 | dataset/groundtruth/normal_13.tif | dataset/rawimages/normal_13.tif | 2.5MiB | Download | AN35 | dataset/groundtruth/normal_14.tif | dataset/rawimages/normal_14.tif | 2.5MiB | Download | AN36 | dataset/groundtruth/normal_15.tif | dataset/rawimages/normal_15.tif | 2.5MiB | Download | AN37 | dataset/groundtruth/normal_16.tif | dataset/rawimages/normal_16.tif | 2.5MiB | Download | AN38 | dataset/groundtruth/normal_17.tif | dataset/rawimages/normal_17.tif | 2.5MiB | Download | AN39 | dataset/groundtruth/normal_18.tif | dataset/rawimages/normal_18.tif | 2.5MiB | Download | AN40 | dataset/groundtruth/normal_19.tif | dataset/rawimages/normal_19.tif | 2.5MiB | Download | AN41 | dataset/groundtruth/normal_2.tif | dataset/rawimages/normal_2.tif | 2.5MiB | Download | AN42 | dataset/groundtruth/normal_20.tif | dataset/rawimages/normal_20.tif | 2.5MiB | Download | AN43 | dataset/groundtruth/normal_21.tif | dataset/rawimages/normal_21.tif | 2.5MiB | Download | AN44 | dataset/groundtruth/normal_22.tif | dataset/rawimages/normal_22.tif | 2.5MiB | Download | AN45 | dataset/groundtruth/normal_23.tif | dataset/rawimages/normal_23.tif | 2.5MiB | Download | AN46 | dataset/groundtruth/normal_24.tif | dataset/rawimages/normal_24.tif | 2.5MiB | Download | AN47 | dataset/groundtruth/normal_25.tif | dataset/rawimages/normal_25.tif | 2.5MiB | Download | AN48 | dataset/groundtruth/normal_26.tif | dataset/rawimages/normal_26.tif | 2.5MiB | Download | AN49 | dataset/groundtruth/normal_27.tif | dataset/rawimages/normal_27.tif | 2.5MiB | Download | AN50 | dataset/groundtruth/normal_28.tif | dataset/rawimages/normal_28.tif | 2.5MiB | Download | AN51 | dataset/groundtruth/normal_29.tif | dataset/rawimages/normal_29.tif | 2.5MiB | Download | AN52 | dataset/groundtruth/normal_3.tif | dataset/rawimages/normal_3.tif | 2.5MiB | Download | AN53 | dataset/groundtruth/normal_30.tif | dataset/rawimages/normal_30.tif | 2.5MiB | Download | AN54 | dataset/groundtruth/normal_31.tif | dataset/rawimages/normal_31.tif | 2.5MiB | Download | AN55 | dataset/groundtruth/normal_32.tif | dataset/rawimages/normal_32.tif | 2.5MiB | Download | AN56 | dataset/groundtruth/normal_33.tif | dataset/rawimages/normal_33.tif | 2.5MiB | Download | AN57 | dataset/groundtruth/normal_34.tif | dataset/rawimages/normal_34.tif | 2.7MiB | Download | AN58 | dataset/groundtruth/normal_35.tif | dataset/rawimages/normal_35.tif | 2.7MiB | Download | AN59 | dataset/groundtruth/normal_36.tif | dataset/rawimages/normal_36.tif | 2.7MiB | Download | AN60 | dataset/groundtruth/normal_37.tif | dataset/rawimages/normal_37.tif | 2.7MiB | Download | AN61 | dataset/groundtruth/normal_38.tif | dataset/rawimages/normal_38.tif | 2.7MiB | Download | AN62 | dataset/groundtruth/normal_39.tif | dataset/rawimages/normal_39.tif | 2.7MiB | Download | AN63 | dataset/groundtruth/normal_4.tif | dataset/rawimages/normal_4.tif | 2.5MiB | Download | AN64 | dataset/groundtruth/normal_40.tif | dataset/rawimages/normal_40.tif | 2.7MiB | Download | AN65 | dataset/groundtruth/normal_5.tif | dataset/rawimages/normal_5.tif | 2.5MiB | Download | AN66 | dataset/groundtruth/normal_6.tif | dataset/rawimages/normal_6.tif | 2.5MiB | Download | AN67 | dataset/groundtruth/normal_7.tif | dataset/rawimages/normal_7.tif | 2.5MiB | Download | AN68 | dataset/groundtruth/normal_8.tif | dataset/rawimages/normal_8.tif | 2.5MiB | Download | AN69 | dataset/groundtruth/normal_9.tif | dataset/rawimages/normal_9.tif | 2.5MiB | Download | AN70 | dataset/groundtruth/otherspecimen_0.tif | dataset/rawimages/otherspecimen_0.tif | 2.5MiB | Download | AN71 | dataset/groundtruth/otherspecimen_1.tif | dataset/rawimages/otherspecimen_1.tif | 2.5MiB | Download | AN72 | dataset/groundtruth/otherspecimen_2.tif | dataset/rawimages/otherspecimen_2.tif | 2.5MiB | Download | AN73 | dataset/groundtruth/otherspecimen_3.tif | dataset/rawimages/otherspecimen_3.tif | 1.5MiB | Download | AN74 | dataset/groundtruth/otherspecimen_4.tif | dataset/rawimages/otherspecimen_4.tif | 2.0MiB | Download | AN75 | dataset/groundtruth/otherspecimen_5.tif | dataset/rawimages/otherspecimen_5.tif | 2.0MiB | Download | AN76 | dataset/groundtruth/otherspecimen_6.tif | dataset/rawimages/otherspecimen_6.tif | 2.0MiB | Download | AN77 | dataset/groundtruth/otherspecimen_7.tif | dataset/rawimages/otherspecimen_7.tif | 2.0MiB | Download | AN78 | dataset/groundtruth/otherspecimen_8.tif | dataset/rawimages/otherspecimen_8.tif | 2.0MiB | Download | AN79 | dataset/groundtruth/otherspecimen_9.tif | dataset/rawimages/otherspecimen_9.tif | 2.0MiB | Download | AN80 | dataset/groundtruth_svgs/Ganglioneuroblastoma_0.jpg | dataset/rawimages/Ganglioneuroblastoma_0.tif | 124.4KiB | Download | AN81 | dataset/groundtruth_svgs/Ganglioneuroblastoma_0.svg | dataset/rawimages/Ganglioneuroblastoma_0.tif | 212.5KiB | Download | AN82 | dataset/groundtruth_svgs/Ganglioneuroblastoma_1.jpg | dataset/rawimages/Ganglioneuroblastoma_1.tif | 140.4KiB | Download | AN83 | dataset/groundtruth_svgs/Ganglioneuroblastoma_1.svg | dataset/rawimages/Ganglioneuroblastoma_1.tif | 238.0KiB | Download | AN84 | dataset/groundtruth_svgs/Ganglioneuroblastoma_10.jpg | dataset/rawimages/Ganglioneuroblastoma_10.tif | 128.5KiB | Download | AN85 | dataset/groundtruth_svgs/Ganglioneuroblastoma_10.svg | dataset/rawimages/Ganglioneuroblastoma_10.tif | 24.9KiB | Download | AN86 | dataset/groundtruth_svgs/Ganglioneuroblastoma_2.jpg | dataset/rawimages/Ganglioneuroblastoma_2.tif | 137.5KiB | Download | AN87 | dataset/groundtruth_svgs/Ganglioneuroblastoma_2.svg | dataset/rawimages/Ganglioneuroblastoma_2.tif | 244.5KiB | Download | AN88 | dataset/groundtruth_svgs/Ganglioneuroblastoma_3.jpg | dataset/rawimages/Ganglioneuroblastoma_3.tif | 142.2KiB | Download | AN89 | dataset/groundtruth_svgs/Ganglioneuroblastoma_3.svg | dataset/rawimages/Ganglioneuroblastoma_3.tif | 244.1KiB | Download | AN90 | dataset/groundtruth_svgs/Ganglioneuroblastoma_4.jpg | dataset/rawimages/Ganglioneuroblastoma_4.tif | 130.5KiB | Download | AN91 | dataset/groundtruth_svgs/Ganglioneuroblastoma_4.svg | dataset/rawimages/Ganglioneuroblastoma_4.tif | 228.4KiB | Download | AN92 | dataset/groundtruth_svgs/Ganglioneuroblastoma_6.jpg | dataset/rawimages/Ganglioneuroblastoma_6.tif | 129.1KiB | Download | AN93 | dataset/groundtruth_svgs/Ganglioneuroblastoma_6.svg | dataset/rawimages/Ganglioneuroblastoma_6.tif | 28.2KiB | Download | AN94 | dataset/groundtruth_svgs/Ganglioneuroblastoma_7.jpg | dataset/rawimages/Ganglioneuroblastoma_7.tif | 178.6KiB | Download | AN95 | dataset/groundtruth_svgs/Ganglioneuroblastoma_7.svg | dataset/rawimages/Ganglioneuroblastoma_7.tif | 310.3KiB | Download | AN96 | dataset/groundtruth_svgs/Ganglioneuroblastoma_8.jpg | dataset/rawimages/Ganglioneuroblastoma_8.tif | 102.8KiB | Download | AN97 | dataset/groundtruth_svgs/Ganglioneuroblastoma_8.svg | dataset/rawimages/Ganglioneuroblastoma_8.tif | 93.3KiB | Download | AN98 | dataset/groundtruth_svgs/Ganglioneuroblastoma_9.jpg | dataset/rawimages/Ganglioneuroblastoma_9.tif | 27.9KiB | Download | AN99 | 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dataset/visualized_singlecell_groundtruth/Neuroblastoma_15_singlemask.png | dataset/rawimages/Neuroblastoma_15.tif | 8.6KiB | Download | AN363 | dataset/visualized_singlecell_groundtruth/Neuroblastoma_16_singlemask.png | dataset/rawimages/Neuroblastoma_16.tif | 8.8KiB | Download | AN364 | dataset/visualized_singlecell_groundtruth/Neuroblastoma_17_singlemask.png | dataset/rawimages/Neuroblastoma_17.tif | 8.6KiB | Download | AN365 | dataset/visualized_singlecell_groundtruth/normal_26_singlemask.png | dataset/rawimages/normal_26.tif | 9.0KiB | Download | AN366 | dataset/visualized_singlecell_groundtruth/normal_27_singlemask.png | dataset/rawimages/normal_27.tif | 7.9KiB | Download | AN367 | dataset/visualized_singlecell_groundtruth/normal_28_singlemask.png | dataset/rawimages/normal_28.tif | 8.9KiB | Download | AN368 | dataset/visualized_singlecell_groundtruth/normal_29_singlemask.png | dataset/rawimages/normal_29.tif | 8.0KiB | Download | AN369 | dataset/visualized_singlecell_groundtruth/normal_30_singlemask.png | dataset/rawimages/normal_30.tif | 9.5KiB | Download | AN370 | dataset/visualized_singlecell_groundtruth/normal_31_singlemask.png | dataset/rawimages/normal_31.tif | 7.9KiB | Download | AN371 | dataset/visualized_singlecell_groundtruth/normal_32_singlemask.png | dataset/rawimages/normal_32.tif | 10.7KiB | Download | AN372 | dataset/visualized_singlecell_groundtruth/normal_33_singlemask.png | dataset/rawimages/normal_33.tif | 9.0KiB | Download | AN373 | dataset/visualized_singlecell_groundtruth/normal_34_singlemask.png | dataset/rawimages/normal_34.tif | 8.2KiB | Download | AN374 | dataset/visualized_singlecell_groundtruth/normal_35_singlemask.png | dataset/rawimages/normal_35.tif | 7.7KiB | Download | AN375 | dataset/visualized_singlecell_groundtruth/normal_36_singlemask.png | dataset/rawimages/normal_36.tif | 7.7KiB | Download | AN376 | dataset/visualized_singlecell_groundtruth/normal_38_singlemask.png | dataset/rawimages/normal_38.tif | 7.6KiB | Download | AN377 | dataset/visualized_singlecell_groundtruth/normal_39_singlemask.png | dataset/rawimages/normal_39.tif | 7.7KiB | Download | AN378 | dataset/visualized_singlecell_groundtruth/normal_40_singlemask.png | dataset/rawimages/normal_40.tif | 7.7KiB | Download | AN379 | dataset/visualized_singlecell_groundtruth/otherspecimen_0_singlemask.png | dataset/rawimages/otherspecimen_0.tif | 8.0KiB | Download | AN380 | dataset/visualized_singlecell_groundtruth/otherspecimen_1_singlemask.png | dataset/rawimages/otherspecimen_1.tif | 8.7KiB | Download | AN381 | dataset/visualized_singlecell_groundtruth/otherspecimen_2_singlemask.png | dataset/rawimages/otherspecimen_2.tif | 9.9KiB | Download | AN382 | dataset/visualized_singlecell_groundtruth/otherspecimen_3_singlemask.png | dataset/rawimages/otherspecimen_3.tif | 8.9KiB | Download | AN383 | dataset/visualized_singlecell_groundtruth/otherspecimen_4_singlemask.png | dataset/rawimages/otherspecimen_4.tif | 7.6KiB | Download | AN384 | dataset/visualized_singlecell_groundtruth/otherspecimen_5_singlemask.png | dataset/rawimages/otherspecimen_5.tif | 7.4KiB | Download | AN385 | dataset/visualized_singlecell_groundtruth/otherspecimen_6_singlemask.png | dataset/rawimages/otherspecimen_6.tif | 7.9KiB | Download | AN386 | dataset/visualized_singlecell_groundtruth/otherspecimen_7_singlemask.png | dataset/rawimages/otherspecimen_7.tif | 7.4KiB | Download | AN387 | dataset/visualized_singlecell_groundtruth/otherspecimen_8_singlemask.png | dataset/rawimages/otherspecimen_8.tif | 7.4KiB | Download | AN388 | dataset/visualized_singlecell_groundtruth/otherspecimen_9_singlemask.png | dataset/rawimages/otherspecimen_9.tif | 7.5KiB | Download |
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Models
Deep Learning models trained with this dataset : https://github.com/perlfloccri/NuclearSegmentationPipeline