S-BIAD493alpha

A Multi-Spectral Myelin Annotation Tool for Machine Learning Based Myelin Quantification

Released: 2022-07-28
By: Bilal Kerman, Behcet Toreyin

On this page

In a nutshell

  • 25 images
  • 5 annotations
  • License : https://creativecommons.org/licenses/by/4.0/

This dataset has

  • ground truth
  • training data
Example image for this dataset
Example image for this dataset
Example annotation for this dataset
Example annotation for this dataset

Study Information

Study Summary
Multi-channel images and ground truth annotations of Myelin used to develop an automated Myelin annotating Machine Learning tool
Annotation Summary
Ground truth annotations of Myelin based on mutli-channel images
Organism
Mus musculus
Imaging type
confocal microscopy

Viewable images

Image ID Preview Filename Dimensions
(T, C, Z, Y, X)		 Download Size Actions
IM1
Sample2 (1, 3, 41, 2253, 8781) Unavailable
IM2
Sample3 (1, 3, 42, 2253, 8346) Unavailable
IM3
Sample1 (1, 3, 47, 2253, 8346) Unavailable
IM4
Sample5 (1, 3, 33, 2253, 8781) Unavailable
IM5
Sample4 (1, 3, 33, 2253, 8781) Unavailable
IM6,AN1
20201022-ftp/experimentA/Sample_Myelin_Images2/Sample2_Ground_Truth.tif (1, 1, 41, 2253, 8781) Unavailable
IM7,AN3
20201022-ftp/experimentA/Sample_Myelin_Images3/Sample3_Ground_Truth.tif (1, 1, 42, 2253, 8346) Unavailable
IM8,AN2
20201022-ftp/experimentA/Sample_Myelin_Images1/Sample1_Ground_Truth.tif (1, 1, 47, 2253, 8346) Unavailable
IM9,AN5
20201022-ftp/experimentA/Sample_Myelin_Images5/Sample5_Ground_Truth.tif (1, 1, 33, 2253, 8781) Unavailable
IM10,AN4
20201022-ftp/experimentA/Sample_Myelin_Images4/Sample4_Ground_Truth.tif (1, 1, 33, 2253, 8781) Unavailable

Annotations

  • Annotation type(s): segmentation masks
  • Annotation method(s): human(expert)
Annotation ID Filename Source Image Download Size Actions
AN1 20201022-ftp/experimentA/Sample_Myelin_Images2/Sample2_Ground_Truth.tif Sample2 773.6MiB Download
AN2 20201022-ftp/experimentA/Sample_Myelin_Images1/Sample1_Ground_Truth.tif Sample1 842.8MiB Download
AN3 20201022-ftp/experimentA/Sample_Myelin_Images3/Sample3_Ground_Truth.tif Sample3 753.2MiB Download
AN4 20201022-ftp/experimentA/Sample_Myelin_Images4/Sample4_Ground_Truth.tif Sample4 622.6MiB Download
AN5 20201022-ftp/experimentA/Sample_Myelin_Images5/Sample5_Ground_Truth.tif Sample5 622.6MiB Download

Models


All images

Image ID Filename Download Size Actions
IM1 Sample2 Unavailable Download
IM2 Sample3 Unavailable Download
IM3 Sample1 Unavailable Download
IM4 Sample5 Unavailable Download
IM5 Sample4 Unavailable Download
0d70c05b-07a5-4641-955d-f6deb7cec6d5 20201022-ftp/experimentA/Sample_Myelin_Images4/Sample4_Nucleus.tif Unavailable Download
IM6 20201022-ftp/experimentA/Sample_Myelin_Images2/Sample2_Ground_Truth.tif Unavailable Download
101a0892-79b8-4582-abc7-6099a76a8b5a 20201022-ftp/experimentA/Sample_Myelin_Images4/Sample4_Oligodendrocyte.tif Unavailable Download
23c8b102-90f1-43a0-86e8-5d3ba2566f2e 20201022-ftp/experimentA/Sample_Myelin_Images1/Sample1_Axon.tif Unavailable Download
23d35ff5-135c-42cf-bfa8-969f52d96c90 20201022-ftp/experimentA/Sample_Myelin_Images2/Sample2_Oligodendrocyte.tif Unavailable Download
IM7 20201022-ftp/experimentA/Sample_Myelin_Images3/Sample3_Ground_Truth.tif Unavailable Download
27934cea-21ee-4a79-906a-cedb3700ec0c 20201022-ftp/experimentA/Sample_Myelin_Images1/Sample1_Nucleus.tif Unavailable Download
28b98522-5ad1-481c-a11f-4ad536485b55 20201022-ftp/experimentA/Sample_Myelin_Images5/Sample5_Nucleus.tif Unavailable Download
IM8 20201022-ftp/experimentA/Sample_Myelin_Images1/Sample1_Ground_Truth.tif Unavailable Download
3b2d7134-fa27-4960-8e5c-b7c5636cb454 20201022-ftp/experimentA/Sample_Myelin_Images5/Sample5_Oligodendrocyte.tif Unavailable Download
IM9 20201022-ftp/experimentA/Sample_Myelin_Images5/Sample5_Ground_Truth.tif Unavailable Download
4f599b6a-3ee0-428d-ad67-d77f0b0fd616 20201022-ftp/experimentA/Sample_Myelin_Images2/Sample2_Axon.tif Unavailable Download
63e030fb-c876-48c9-a797-546cca3e1364 20201022-ftp/experimentA/Sample_Myelin_Images1/Sample1_Oligodendrocyte.tif Unavailable Download
IM10 20201022-ftp/experimentA/Sample_Myelin_Images4/Sample4_Ground_Truth.tif Unavailable Download
811e576b-7a78-46de-a00b-1e333ede8211 20201022-ftp/experimentA/Sample_Myelin_Images2/Sample2_Nucleus.tif Unavailable Download
93885d2d-e13e-49a6-9f3d-c3cd2fa15a0f 20201022-ftp/experimentA/Sample_Myelin_Images3/Sample3_Axon.tif Unavailable Download
9da45e00-7237-4660-bdf1-b774d2ca2046 20201022-ftp/experimentA/Sample_Myelin_Images5/Sample5_Axon.tif Unavailable Download
a00666a8-f1d0-44f8-807e-44608c86563d 20201022-ftp/experimentA/Sample_Myelin_Images3/Sample3_Oligodendrocyte.tif Unavailable Download
bc6d1002-e4aa-493e-b024-82b437a53b00 20201022-ftp/experimentA/Sample_Myelin_Images3/Sample3_Nucleus.tif Unavailable Download
cf6517de-8c2f-406a-a2c7-906cd99cb669 20201022-ftp/experimentA/Sample_Myelin_Images4/Sample4_Axon.tif Unavailable Download